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Repository Created on April 15, 2021, 9:17 pm
Collection of WDL workflows based off the University of Washington TOPMed DCC Best Practices for GWAS. The WDL structure was based upon CWLs written by the Seven Bridges development team.
Last updated on November 29, 2022, 10:47 pm
Repository Created on October 6, 2016, 6:12 pm
Wrapper workflow and Decider for RSEM tool (transcription analysis for RNAseq)
Last updated on November 12, 2021, 6:52 pm
Repository Created on December 16, 2017, 3:40 pm
Last updated on March 15, 2018, 9:20 am
Repository Created on November 7, 2017, 11:22 pm
Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure
Last updated on August 6, 2021, 3:48 am
Repository Created on January 29, 2018, 7:01 pm
Last updated on January 29, 2018, 9:13 pm
Repository Created on July 13, 2018, 8:36 pm
Last updated on August 25, 2018, 4:28 pm
Repository Created on July 12, 2018, 3:41 pm
WGS workflow with WDL
Last updated on July 12, 2018, 6:44 pm
Repository Created on April 25, 2018, 7:14 pm
Convert a maf file to a bed file to use with BEDtools.
Last updated on April 25, 2018, 7:15 pm
Repository Created on November 19, 2018, 11:17 pm
Last updated on November 19, 2018, 11:18 pm
Repository Created on May 5, 2019, 2:04 am
WDL task library
Last updated on June 10, 2021, 7:12 am
Repository Created on January 9, 2020, 10:25 am
Last updated on July 2, 2021, 1:57 am
Repository Created on January 17, 2020, 11:58 am
The BioWDL implemention of the GATK CNV calling workflow. Category:Multi-Sample
Last updated on February 15, 2022, 10:00 am
Repository Created on February 14, 2020, 3:54 pm
WDL implementation of YAMP
Last updated on February 25, 2020, 2:46 pm
Repository Created on November 28, 2019, 6:05 pm
Last updated on November 28, 2019, 7:19 pm
Repository Created on July 20, 2020, 12:28 pm
Learning how to use the Microsoft libraries for cromwell running on Azure
Last updated on July 20, 2020, 8:39 pm
Repository Created on July 21, 2020, 10:26 pm
docker-bam2fasta in docker hub
Last updated on July 24, 2020, 3:37 pm
Repository Created on October 6, 2020, 1:49 pm
A quick and dirty bacterial genome assembly and annotation pipeline to experiment with Cromwell and AWS
Last updated on October 8, 2020, 1:27 pm
Repository Created on December 24, 2020, 2:55 pm
Last updated on December 24, 2020, 3:01 pm
Repository Created on December 15, 2020, 6:39 pm
WDL scipt to run sample swap detection tool
Last updated on February 2, 2021, 2:55 pm
Repository Created on April 8, 2021, 9:16 pm
A simple WDL workflow for testing and demonstration.
Last updated on April 8, 2021, 9:20 pm
Repository Created on June 9, 2021, 9:33 pm
Examine little parts of a big VCF file. Only useful for debugging and file comparsion.
Last updated on June 10, 2021, 8:06 pm
Repository Created on June 23, 2021, 12:45 am
Last updated on August 10, 2021, 11:12 pm
Repository Created on June 15, 2021, 8:22 am
Last updated on June 15, 2021, 8:30 am
Repository Created on February 21, 2021, 3:46 am
Last updated on May 15, 2021, 2:00 am
Repository Created on March 24, 2021, 3:11 pm
Last updated on March 28, 2021, 3:09 pm
Repository Created on March 12, 2021, 6:17 pm
GATK For Primates Best Practices Protocol
Last updated on November 27, 2021, 4:43 pm
Repository Created on March 17, 2021, 6:43 pm
Last updated on March 17, 2021, 6:44 pm
Repository Created on November 16, 2021, 4:40 pm
WDL workflow for identifying fusion sites from tumor BAMs
Last updated on December 29, 2021, 4:15 pm
Repository Created on December 3, 2021, 11:29 pm
Last updated on January 7, 2022, 10:43 pm
Repository Created on November 17, 2021, 8:48 am
Variant Caller Analysis across whole human genome assemblies
Last updated on November 17, 2021, 9:00 am